Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8237

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16604 and 16605 are separated by 393 nucleotides16605 and 16606 are separated by 609 nucleotides mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733,012 to 733,833 16604 mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734,227 to 736,264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736,874 to 737,919 16606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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733,232 - 16604 mRNA_8236 0.27 -0.6
733,239 - 16604 mRNA_8236 0.28 +0.2
733,659 - 16604 mRNA_8236 0.79 -0.0
733,685 - 16604 mRNA_8236 0.82 +0.2
733,692 - 16604 mRNA_8236 0.83 +0.7
733,692 - 16604 mRNA_8236 0.83 -0.8
733,701 + 16604 mRNA_8236 0.84 +0.1
733,725 - 16604 mRNA_8236 0.87 -1.2
733,835 + -0.4
733,837 + +0.4
734,250 + +0.1
734,251 - -1.1
734,272 + +0.9
734,426 + +1.3
734,459 + 16605 mRNA_8237 0.11 +1.9
734,581 + 16605 mRNA_8237 0.17 +0.7
734,656 - 16605 mRNA_8237 0.21 +0.8
734,679 + 16605 mRNA_8237 0.22 +0.3
734,986 + 16605 mRNA_8237 0.37 +1.2
735,132 - 16605 mRNA_8237 0.44 -0.4
735,566 + 16605 mRNA_8237 0.66 +0.9
735,704 + 16605 mRNA_8237 0.72 -0.1
735,822 + 16605 mRNA_8237 0.78 +0.1
735,983 - 16605 mRNA_8237 0.86 -0.5
736,010 - 16605 mRNA_8237 0.87 +0.3
736,011 + 16605 mRNA_8237 0.88 +0.3
736,019 + 16605 mRNA_8237 0.88 +1.8
736,025 + 16605 mRNA_8237 0.88 +0.0
736,137 - +1.0
736,148 + -1.2
736,169 + +0.6
736,172 - +0.4
736,224 - +0.7
736,309 - -0.2
736,315 + -0.9
736,324 - +0.2
736,329 + +0.6
736,329 - -1.0
736,334 - -0.1
736,350 - -1.1
736,351 + -1.0
736,457 + -0.3
736,479 - +0.6
736,487 - +0.3
736,488 - +0.2
736,488 + -0.9
736,490 - +2.0
736,498 + -0.4
736,500 - -0.6
736,501 - +0.2
736,501 + +0.6
736,502 + +0.4
736,502 + +0.4
736,502 + -1.0
736,503 + -2.1
736,504 - -1.0
736,505 + +0.4
736,505 - +0.8
736,506 - -1.1
736,508 + -0.1
736,510 + +0.1
736,511 - +1.3
736,511 - -0.2
736,544 - -0.1
736,545 + -0.5
736,546 - -0.5
736,566 + -0.4
736,581 + -1.0
736,663 - +0.4
736,675 + -1.1
736,686 + -0.2
736,714 - -0.5
736,714 + -0.1
736,725 - -2.4
736,731 - -0.3
736,745 + -0.0
736,857 - +0.1
736,863 + +0.9
736,866 - -1.9
736,881 + +0.5
737,003 - 16606 mRNA_8238 0.12 +0.5
737,004 - 16606 mRNA_8238 0.12 +0.3
737,005 + 16606 mRNA_8238 0.13 -1.9
737,012 - 16606 mRNA_8238 0.13 -1.2
737,036 - 16606 mRNA_8238 0.15 +0.1

Or see this region's nucleotide sequence