Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8349

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16716 and 16717 are separated by 692 nucleotides mRNA_8348: 16716 - K05349 bglX beta-glucosidase, at 995,447 to 998,474 16716 mRNA_8349: 16717 - K05349 bglX beta-glucosidase, at 999,167 to 1,002,495 16717

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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998,191 + -0.3
998,323 + +1.2
998,335 - -0.0
998,354 + +0.1
998,422 - -0.2
998,423 - +1.1
998,429 + +0.2
998,443 + +0.3
998,472 + +0.2
998,472 - -0.4
998,481 + +0.6
998,498 - -1.8
998,500 + +0.0
998,515 + +1.8
998,524 - -0.9
998,579 - -0.7
998,594 - -1.3
998,600 - +0.5
998,615 + +0.2
998,630 + -0.0
998,633 - -0.9
998,641 - -0.2
998,643 + -0.3
998,657 - +0.2
998,659 - -0.1
998,663 + +0.5
998,698 - -0.1
998,705 - +0.6
998,724 - -0.2
998,745 - +0.5
998,751 - -0.1
998,754 - +0.3
998,755 - +0.1
998,756 + -0.3
998,763 - +0.4
998,767 - -0.9
998,770 - -0.2
998,771 - +0.3
998,773 + +0.4
998,786 + -0.4
998,786 - +0.3
998,788 - -0.4
998,792 - -0.2
998,797 - +2.3
998,801 - +2.1
998,802 - +2.0
998,804 - +0.2
998,810 + -1.2
998,810 + -0.3
998,814 + -0.0
998,817 + +0.7
998,830 - +0.2
998,842 - +0.9
998,845 + +0.3
998,861 + -0.4
998,867 + -0.4
998,880 - -1.6
998,881 + +0.3
998,935 - -0.8
998,940 - +0.3
998,940 - +0.3
998,940 + +1.1
998,968 - -0.9
998,995 + -0.0
999,009 - -1.1
999,038 - +0.6
999,041 - -0.2
999,049 + -2.5
999,061 + +0.1
999,074 + -0.1
999,078 + +1.4
999,090 - +1.9
999,109 + +0.8
999,127 + +0.9
999,518 + 16717 mRNA_8349 0.11 +0.3
999,545 + 16717 mRNA_8349 0.11 -0.5
999,697 + 16717 mRNA_8349 0.16 +0.5
999,928 + 16717 mRNA_8349 0.23 +0.6
1,000,015 - 16717 mRNA_8349 0.25 -0.2
1,000,123 + 16717 mRNA_8349 0.29 -0.1
1,000,550 - 16717 mRNA_8349 0.42 +1.0
1,000,558 - 16717 mRNA_8349 0.42 +0.8
1,000,569 + 16717 mRNA_8349 0.42 +1.3
1,000,578 + 16717 mRNA_8349 0.42 -0.1
1,000,868 + 16717 mRNA_8349 0.51 -0.1
1,000,928 + 16717 mRNA_8349 0.53 -0.1
1,001,010 - 16717 mRNA_8349 0.55 -1.6
1,001,019 + 16717 mRNA_8349 0.56 +0.2
1,001,146 + 16717 mRNA_8349 0.59 +0.2
1,001,175 + 16717 mRNA_8349 0.60 +0.8
1,001,193 + 16717 mRNA_8349 0.61 +1.0
1,001,401 + 16717 mRNA_8349 0.67 -0.5
1,001,571 - 16717 mRNA_8349 0.72 -0.2
1,001,605 - 16717 mRNA_8349 0.73 +0.4
1,001,616 - 16717 mRNA_8349 0.74 -0.5
1,001,625 + 16717 mRNA_8349 0.74 +0.3
1,001,720 - 16717 mRNA_8349 0.77 +0.2
1,002,437 + +1.0
1,002,486 - +0.4
1,002,493 + -0.5
1,002,585 + -0.5
1,002,634 + +1.5
1,002,648 + +0.5
1,002,746 + +0.6
1,002,878 - -1.1
1,002,921 - -0.8
1,002,935 + -0.4
1,002,935 + +0.1
1,002,950 - -0.1
1,003,027 - -0.4
1,003,040 - +0.0
1,003,053 + -0.6
1,003,064 + +0.3
1,003,083 - +0.1
1,003,086 - +0.3
1,003,187 - +0.5
1,003,213 - +0.2
1,003,226 + +1.3

Or see this region's nucleotide sequence