Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8380

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16747 and 16748 are separated by 52 nucleotides16748 and 16749 are separated by 214 nucleotides mRNA_8379: 16747 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,072,977 to 1,073,638 16747 mRNA_8380: 16748 - KOG4197 FOG PPR repeat, at 1,073,691 to 1,078,543 16748 mRNA_8381: 16749 - Hypothetical Protein, at 1,078,758 to 1,080,099 16749

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,073,695 + +0.0
1,073,705 + -0.7
1,073,723 + -0.1
1,073,734 - -0.4
1,073,825 + +0.6
1,073,877 - -0.5
1,073,886 + -0.2
1,073,931 + -0.7
1,078,651 + -1.3
1,078,759 + -0.3
1,078,849 - +1.2
1,079,366 - 16749 mRNA_8381 0.45 +0.4
1,079,543 - 16749 mRNA_8381 0.58 +0.1

Or see this region's nucleotide sequence