Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8391

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16758 and 16759 are separated by 124 nucleotides16759 and 16760 are separated by 262 nucleotides mRNA_8390: 16758 - K00387 SUOX sulfite oxidase, at 1,099,792 to 1,101,469 16758 mRNA_8391: 16759 - HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222, at 1,101,594 to 1,103,958 16759 mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1,104,221 to 1,108,536 16760

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,100,674 - 16758 mRNA_8390 0.53 -0.2
1,100,695 - 16758 mRNA_8390 0.54 -0.8
1,100,803 - 16758 mRNA_8390 0.60 -1.2
1,101,082 + 16758 mRNA_8390 0.77 -0.1
1,101,239 - 16758 mRNA_8390 0.86 -0.0
1,101,394 + -0.3
1,101,539 - -0.3
1,101,542 + +2.0
1,101,557 + +0.6
1,101,561 + +0.3
1,101,562 - +0.6
1,101,701 + -1.1
1,101,732 + -1.3
1,102,160 + 16759 mRNA_8391 0.24 -0.4
1,102,622 + 16759 mRNA_8391 0.43 +0.4
1,102,730 - 16759 mRNA_8391 0.48 +0.0
1,102,888 - 16759 mRNA_8391 0.55 -0.6
1,102,918 + 16759 mRNA_8391 0.56 -0.5
1,103,182 + 16759 mRNA_8391 0.67 -0.5
1,103,466 - 16759 mRNA_8391 0.79 +0.7
1,103,475 - 16759 mRNA_8391 0.80 +0.7
1,103,630 - 16759 mRNA_8391 0.86 +0.1
1,103,634 - 16759 mRNA_8391 0.86 +0.3
1,103,681 + 16759 mRNA_8391 0.88 +1.8
1,103,764 - -0.2
1,104,045 + +0.4
1,104,067 + +0.1
1,104,230 + +0.4
1,104,238 - -0.2
1,104,392 + +0.3
1,104,396 + +0.4
1,104,518 + -0.8

Or see this region's nucleotide sequence