Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8403

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16770 and 16771 are separated by 436 nucleotides16771 and 16772 are separated by 991 nucleotides mRNA_8402: 16770 - K07579 K07579 putative methylase, at 1,133,086 to 1,134,230 16770 mRNA_8403: 16771 - K08829 MAK male germ cell-associated kinase, at 1,134,667 to 1,138,585 16771 mRNA_8404: 16772 - Hypothetical Protein, at 1,139,577 to 1,141,043 16772

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,133,943 + 16770 mRNA_8402 0.75 +0.4
1,133,947 - 16770 mRNA_8402 0.75 +0.6
1,133,987 + 16770 mRNA_8402 0.79 +0.2
1,134,006 - 16770 mRNA_8402 0.80 -0.3
1,134,089 + 16770 mRNA_8402 0.88 +0.1
1,134,142 - +0.5
1,134,152 - +1.4
1,134,157 - +0.9
1,134,302 + -0.3
1,134,446 + -0.9
1,134,454 + +0.8
1,134,475 + +1.0
1,134,484 - +1.5
1,134,613 + +0.1
1,134,744 - -0.9
1,134,772 + -0.0
1,135,010 + +0.3
1,135,368 + 16771 mRNA_8403 0.18 -0.3
1,135,405 - 16771 mRNA_8403 0.19 +0.3
1,135,577 - 16771 mRNA_8403 0.23 -0.1
1,135,916 + 16771 mRNA_8403 0.32 -0.1
1,136,103 + 16771 mRNA_8403 0.37 -0.3
1,136,171 - 16771 mRNA_8403 0.38 -0.1
1,136,406 - 16771 mRNA_8403 0.44 -0.2
1,136,431 - 16771 mRNA_8403 0.45 +0.2
1,136,600 + 16771 mRNA_8403 0.49 -1.2
1,136,918 - 16771 mRNA_8403 0.57 +0.9
1,136,930 - 16771 mRNA_8403 0.58 +0.2
1,137,243 - 16771 mRNA_8403 0.66 +0.6
1,137,342 - 16771 mRNA_8403 0.68 +0.8
1,137,352 + 16771 mRNA_8403 0.69 +0.0
1,137,377 + 16771 mRNA_8403 0.69 +1.3
1,137,606 + 16771 mRNA_8403 0.75 +1.0
1,138,164 + 16771 mRNA_8403 0.89 +0.1
1,138,685 - +0.4
1,138,696 + -0.2
1,138,828 + +0.1
1,138,831 + +0.5
1,138,969 - -0.4
1,138,977 + +1.0
1,138,978 + -1.4
1,138,984 + -1.0
1,138,990 - -0.2
1,139,005 - +0.9
1,139,012 + -0.4
1,139,023 + +0.2
1,139,107 + -1.4
1,139,129 + +0.2
1,139,219 + -0.7
1,139,253 + -2.3
1,139,268 - -0.1
1,139,277 + -0.6
1,139,316 - +1.4
1,139,324 - +0.5
1,139,388 - +0.3
1,139,413 - -0.5
1,139,431 - +0.1
1,139,458 + +0.3
1,139,471 + +0.1
1,139,474 + -0.2
1,139,510 + -0.2
1,139,533 + +0.3

Or see this region's nucleotide sequence