Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_10

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8377 and 8378 are separated by 267 nucleotides8378 and 8379 are separated by 444 nucleotides mRNA_9: 8377 - Hypothetical Protein, at 28,711 to 29,599 8377 mRNA_10: 8378 - Hypothetical Protein, at 29,867 to 30,741 8378 mRNA_11: 8379 - Hypothetical Protein, at 31,186 to 32,050 8379

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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28,937 + 8377 mRNA_9 0.25 +0.6
29,049 - 8377 mRNA_9 0.38 +0.2
29,062 - 8377 mRNA_9 0.39 +0.1
29,112 + 8377 mRNA_9 0.45 +0.8
29,220 - 8377 mRNA_9 0.57 -0.3
29,316 + 8377 mRNA_9 0.68 -0.0
29,501 + 8377 mRNA_9 0.89 +0.5
29,659 + +0.9
29,931 - -1.5
29,938 + +0.3
29,943 - -0.2
30,094 - 8378 mRNA_10 0.26 +0.5
30,106 + 8378 mRNA_10 0.27 -0.1
30,136 + 8378 mRNA_10 0.31 -0.0
30,170 - 8378 mRNA_10 0.35 +1.1
30,178 + 8378 mRNA_10 0.36 -0.9
30,369 + 8378 mRNA_10 0.57 +0.1
30,766 + +1.6
30,806 + +0.2
30,947 - +0.1
30,953 + -0.4
31,039 - -0.1
31,123 - +1.2
31,252 + -1.2
31,328 + 8379 mRNA_11 0.16 +1.2
31,671 - 8379 mRNA_11 0.56 +0.4
31,700 - 8379 mRNA_11 0.59 -2.6
31,707 + 8379 mRNA_11 0.60 +1.3

Or see this region's nucleotide sequence