Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_17

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8385 and 8386 are separated by 330 nucleotides mRNA_17: 8385 - K00856 E2.7.1.20, ADK adenosine kinase, at 48,620 to 50,142 8385 mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50,473 to 51,921 8386

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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47,714 + -0.4
47,874 - -0.2
48,000 - -0.8
48,174 + -1.2
48,185 - +0.6
48,226 - +0.1
48,321 + +0.0
48,357 - +0.5
48,367 + -0.7
48,372 + +0.5
48,455 + -1.2
48,458 - +1.0
48,460 + -1.1
48,464 + +1.5
48,467 + +2.0
48,471 - -1.3
48,473 + +0.4
48,474 - +1.0
48,477 + +0.3
48,495 + +1.9
49,948 + 8385 mRNA_17 0.87 -0.4
50,542 + +0.6
50,663 + 8386 mRNA_18 0.13 -2.5
50,904 - 8386 mRNA_18 0.30 +0.3
50,943 + 8386 mRNA_18 0.32 -0.4
50,946 - 8386 mRNA_18 0.33 +0.5
51,073 - 8386 mRNA_18 0.41 +0.1

Or see this region's nucleotide sequence