Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_142

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8509 and 8510 are separated by 915 nucleotides8510 and 8511 are separated by 468 nucleotides mRNA_141: 8509 - Hypothetical Protein, at 339,978 to 342,089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343,005 to 355,699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356,168 to 357,922 8511

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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342,072 + +0.1
342,127 + -0.1
342,129 + -1.2
342,131 - -0.5
342,144 + +0.3
342,149 - -1.1
342,167 + +0.4
342,171 - +0.4
342,177 + -0.0
342,187 - -0.0
342,220 - -0.2
342,230 - -0.0
342,230 - -0.2
342,248 - -0.3
342,249 + -0.1
342,250 - -0.1
342,250 + -0.1
342,274 + +0.7
342,293 - -0.8
342,309 - +1.6
342,313 + +0.3
342,317 - +0.3
342,326 - +0.8
342,328 - +0.3
342,328 - -0.1
342,330 - +0.5
342,337 - -0.0
342,342 + +0.3
342,344 + -0.2
342,344 + +1.1
342,353 + +0.2
342,476 + -0.2
342,477 + -0.1
342,487 + +0.6
342,488 - +1.4
342,491 - +0.1
342,493 - +0.0
342,550 - -0.8
342,591 - -1.3
342,611 - +0.9
342,619 - -0.3
342,620 + +0.2
342,626 + -0.8
342,639 - -0.3
342,652 + -0.7
342,742 - +0.7
342,750 - -0.6
342,759 - -0.5
342,761 + +0.5
342,762 + +0.4
342,791 - -0.4
342,793 + -1.2
342,808 - +0.5
342,811 + -0.5
342,884 - -0.7
342,951 + +0.1
342,996 - +2.3
343,129 - +0.6
343,132 - +0.3
343,136 + -0.8
343,148 - -1.1
343,184 - -0.8
343,473 + +2.2
344,027 - +1.1
344,199 - -0.5
344,524 - 8510 mRNA_142 0.12 -0.2
344,617 + 8510 mRNA_142 0.13 +0.6
344,632 - 8510 mRNA_142 0.13 +0.1
344,680 + 8510 mRNA_142 0.13 -0.1
344,966 + 8510 mRNA_142 0.15 -0.0
345,239 - 8510 mRNA_142 0.18 +0.8
345,394 + 8510 mRNA_142 0.19 -1.6
345,419 - 8510 mRNA_142 0.19 -1.1
345,458 + 8510 mRNA_142 0.19 -0.1
345,527 - 8510 mRNA_142 0.20 +0.4
345,687 + 8510 mRNA_142 0.21 +0.5
345,741 - 8510 mRNA_142 0.22 +0.1
345,764 + 8510 mRNA_142 0.22 +0.5
345,784 + 8510 mRNA_142 0.22 -0.2
346,252 - 8510 mRNA_142 0.26 -0.8
346,292 + 8510 mRNA_142 0.26 -0.1
346,445 - 8510 mRNA_142 0.27 -0.5
346,527 - 8510 mRNA_142 0.28 -0.9
346,605 + 8510 mRNA_142 0.28 -0.1
346,649 + 8510 mRNA_142 0.29 +0.1
346,705 - 8510 mRNA_142 0.29 +0.5
346,746 + 8510 mRNA_142 0.29 +0.5
347,055 - 8510 mRNA_142 0.32 +0.5
347,061 - 8510 mRNA_142 0.32 +0.2
347,068 - 8510 mRNA_142 0.32 +0.5
347,074 + 8510 mRNA_142 0.32 -0.2
347,166 - 8510 mRNA_142 0.33 +0.5
347,192 + 8510 mRNA_142 0.33 -0.5
347,193 + 8510 mRNA_142 0.33 -0.6
347,272 - 8510 mRNA_142 0.34 -0.0
347,592 - 8510 mRNA_142 0.36 -0.4
347,635 - 8510 mRNA_142 0.36 +0.2
347,645 + 8510 mRNA_142 0.37 +1.0
347,661 - 8510 mRNA_142 0.37 -1.4
347,669 + 8510 mRNA_142 0.37 +1.5
347,788 + 8510 mRNA_142 0.38 -0.9
348,162 + 8510 mRNA_142 0.41 -3.2
348,195 - 8510 mRNA_142 0.41 -0.1
348,328 + 8510 mRNA_142 0.42 +0.8
348,450 + 8510 mRNA_142 0.43 -0.5
348,591 - 8510 mRNA_142 0.44 -0.1
348,591 - 8510 mRNA_142 0.44 +0.0
348,724 - 8510 mRNA_142 0.45 +0.2
348,744 + 8510 mRNA_142 0.45 +0.4
348,820 + 8510 mRNA_142 0.46 +0.1
348,888 - 8510 mRNA_142 0.46 +0.5
348,903 - 8510 mRNA_142 0.46 +0.3
348,954 - 8510 mRNA_142 0.47 +0.9
349,039 - 8510 mRNA_142 0.48 +0.6
349,057 + 8510 mRNA_142 0.48 -0.1
349,099 + 8510 mRNA_142 0.48 -0.1
349,383 - 8510 mRNA_142 0.50 -0.9
349,439 - 8510 mRNA_142 0.51 -1.7
349,458 + 8510 mRNA_142 0.51 +1.0
349,528 + 8510 mRNA_142 0.51 +0.8
349,848 - 8510 mRNA_142 0.54 +1.1
349,878 - 8510 mRNA_142 0.54 -0.6
349,932 - 8510 mRNA_142 0.55 -1.8
349,936 - 8510 mRNA_142 0.55 -0.7
350,006 - 8510 mRNA_142 0.55 -0.1
350,023 + 8510 mRNA_142 0.55 +0.2
350,107 - 8510 mRNA_142 0.56 -1.3
350,148 - 8510 mRNA_142 0.56 -2.1
350,205 - 8510 mRNA_142 0.57 +0.1
350,239 - 8510 mRNA_142 0.57 -0.4
350,350 - 8510 mRNA_142 0.58 +0.6
350,384 + 8510 mRNA_142 0.58 -0.1
350,414 - 8510 mRNA_142 0.58 -1.4
350,501 - 8510 mRNA_142 0.59 -0.1
350,618 + 8510 mRNA_142 0.60 -0.8
350,654 - 8510 mRNA_142 0.60 -1.4
350,656 + 8510 mRNA_142 0.60 -0.6
350,731 + 8510 mRNA_142 0.61 -1.5
350,751 - 8510 mRNA_142 0.61 +0.4
350,778 - 8510 mRNA_142 0.61 +0.9
350,818 - 8510 mRNA_142 0.62 +0.3
351,055 + 8510 mRNA_142 0.63 +0.0
351,081 - 8510 mRNA_142 0.64 -1.2
351,224 - 8510 mRNA_142 0.65 +0.4
351,247 + 8510 mRNA_142 0.65 +1.5
351,295 + 8510 mRNA_142 0.65 +1.6
351,316 + 8510 mRNA_142 0.65 -0.2
351,346 - 8510 mRNA_142 0.66 +0.1
351,454 - 8510 mRNA_142 0.67 -0.1
351,516 + 8510 mRNA_142 0.67 +1.6
351,574 - 8510 mRNA_142 0.67 -0.2
351,584 - 8510 mRNA_142 0.68 -1.3
351,604 + 8510 mRNA_142 0.68 +0.0
351,640 - 8510 mRNA_142 0.68 +0.9
351,660 + 8510 mRNA_142 0.68 +1.0
351,725 + 8510 mRNA_142 0.69 -1.1
351,755 - 8510 mRNA_142 0.69 +1.3
351,796 - 8510 mRNA_142 0.69 +0.7
351,802 + 8510 mRNA_142 0.69 -0.4
351,990 - 8510 mRNA_142 0.71 +0.4
352,000 - 8510 mRNA_142 0.71 +1.1
352,021 - 8510 mRNA_142 0.71 -0.0
352,098 - 8510 mRNA_142 0.72 +0.6
352,103 + 8510 mRNA_142 0.72 -0.8
352,106 + 8510 mRNA_142 0.72 -1.1
352,120 + 8510 mRNA_142 0.72 -0.8
352,153 - 8510 mRNA_142 0.72 -0.5
352,299 - 8510 mRNA_142 0.73 -0.6
352,306 + 8510 mRNA_142 0.73 +0.1
352,315 + 8510 mRNA_142 0.73 -0.6
352,557 - 8510 mRNA_142 0.75 -1.4
352,593 - 8510 mRNA_142 0.76 -0.9
352,593 - 8510 mRNA_142 0.76 +0.4
352,809 + 8510 mRNA_142 0.77 -0.0
352,867 + 8510 mRNA_142 0.78 -2.0
352,913 - 8510 mRNA_142 0.78 +1.4
352,917 + 8510 mRNA_142 0.78 -1.2
353,043 - 8510 mRNA_142 0.79 -0.7
353,115 - 8510 mRNA_142 0.80 +0.1
353,198 + 8510 mRNA_142 0.80 +0.1
353,310 - 8510 mRNA_142 0.81 +0.3
353,375 + 8510 mRNA_142 0.82 -0.5
353,607 + 8510 mRNA_142 0.84 -0.3
353,613 - 8510 mRNA_142 0.84 +0.1
353,705 + 8510 mRNA_142 0.84 -0.7
353,845 - 8510 mRNA_142 0.85 +0.3
353,855 + 8510 mRNA_142 0.85 +0.3
353,893 - 8510 mRNA_142 0.86 +0.2
353,895 + 8510 mRNA_142 0.86 -0.1
353,899 + 8510 mRNA_142 0.86 +0.2
353,949 - 8510 mRNA_142 0.86 +0.2
354,024 + 8510 mRNA_142 0.87 +1.1
354,039 - 8510 mRNA_142 0.87 +1.7
354,076 - 8510 mRNA_142 0.87 +1.0
354,146 + 8510 mRNA_142 0.88 +0.7
354,172 + 8510 mRNA_142 0.88 -0.9
354,186 - 8510 mRNA_142 0.88 -0.3
354,222 - 8510 mRNA_142 0.88 +0.3
354,230 + 8510 mRNA_142 0.88 -0.1
354,482 + +0.4
354,653 - -1.4
354,729 - +0.7
355,099 - +0.4
355,161 - -0.7
355,374 - +0.4
355,403 - -0.2
355,418 - -0.1
355,442 - +0.6
355,531 + +0.5
355,647 + +1.6
355,755 - +0.8
355,785 + +0.2
355,804 + -1.0
356,035 + +1.5
356,179 - +0.4
356,187 - +0.2
356,537 - 8511 mRNA_143 0.21 +0.4
356,609 - 8511 mRNA_143 0.25 -1.4
356,663 + 8511 mRNA_143 0.28 +0.2
356,682 + 8511 mRNA_143 0.29 +0.5

Or see this region's nucleotide sequence