Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_158

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8525 and 8526 are separated by 179 nucleotides8526 and 8527 are separated by 922 nucleotides mRNA_157: 8525 - KOG3066 Translin-associated protein X, at 391,378 to 392,552 8525 mRNA_158: 8526 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 392,732 to 393,571 8526 mRNA_159: 8527 - Hypothetical Protein, at 394,494 to 395,592 8527

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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391,740 - 8525 mRNA_157 0.31 -1.6
391,776 - 8525 mRNA_157 0.34 -0.7
392,222 - 8525 mRNA_157 0.72 +0.9
392,255 - 8525 mRNA_157 0.75 -0.4
392,641 - +0.3
392,768 - +0.1
393,026 - 8526 mRNA_158 0.35 -0.8
393,249 + 8526 mRNA_158 0.62 -0.1
393,362 - 8526 mRNA_158 0.75 +1.1
393,929 - +0.2
393,963 + +2.6
393,967 - +0.4
394,007 + +1.0
394,047 - -0.6
394,061 + -0.0
394,070 + -0.4
394,221 + +0.6
394,222 - +0.0
394,223 - -0.5
394,226 - -0.2
394,228 + -0.7
394,228 + -2.2
394,234 - +0.4
394,236 + +0.5
394,242 - +0.2
394,252 - +0.1
394,259 + -1.3
394,260 + +0.1
394,260 + -0.2
394,263 - -0.2
394,265 + -0.3
394,265 - -0.1
394,288 - +0.3
394,306 - -1.0
394,333 + -0.4
394,361 - -0.4
394,363 + +0.6
394,375 - +0.2
394,375 - +0.0
394,375 - +0.3
394,382 + +0.4
394,382 + +0.4
394,383 - +0.5
394,399 - -0.2
394,407 + -0.5
394,411 - +1.3
394,413 + -0.1
394,419 + -0.0
394,438 - +0.4
394,444 + -0.7
394,445 - -0.5
394,558 - -0.1
394,568 + +0.2
394,570 + -0.1

Or see this region's nucleotide sequence