Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_270

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8637 and 8638 are separated by 272 nucleotides8638 and 8639 are separated by 317 nucleotides mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644,049 to 645,349 8637 mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645,622 to 646,120 8638 mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646,438 to 653,784 8639

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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644,714 - 8637 mRNA_269 0.51 -0.9
644,871 + 8637 mRNA_269 0.63 +0.9
645,072 - 8637 mRNA_269 0.79 +0.2
646,239 + +0.7
646,245 + -0.5
646,253 + +1.2
646,255 + +0.7
646,272 - +0.3
646,275 + -0.1

Or see this region's nucleotide sequence