Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_289

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8656 and 8657 are separated by 136 nucleotides8657 and 8658 are separated by 358 nucleotides mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684,049 to 686,611 8656 mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686,748 to 688,788 8657 mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689,147 to 690,940 8658

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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685,993 - 8656 mRNA_288 0.76 -1.4
686,314 + 8656 mRNA_288 0.88 +0.0
686,419 + +0.9
686,439 - -0.8
686,574 - -0.1
686,581 - +0.5
686,587 + +0.3
686,606 + +0.3
686,607 - +1.0
686,740 - +0.7
686,742 + -2.1
686,743 - -1.5
686,751 - -0.0
686,884 + +0.0
686,893 - -1.3
687,066 - 8657 mRNA_289 0.16 +0.1
687,197 + 8657 mRNA_289 0.22 +0.1
687,922 + 8657 mRNA_289 0.58 +0.1
687,939 + 8657 mRNA_289 0.58 +0.5
687,942 + 8657 mRNA_289 0.59 -0.9
688,080 - 8657 mRNA_289 0.65 -0.4
688,379 + 8657 mRNA_289 0.80 +2.1
688,810 - -0.2
688,834 + +2.0
688,844 + +1.5
688,999 + -1.3
689,568 + 8658 mRNA_290 0.23 -1.0

Or see this region's nucleotide sequence