Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_299

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8666 and 8667 are separated by 238 nucleotides8667 and 8668 are separated by 635 nucleotides mRNA_298: 8666 - KOG0725 Reductases with broad range of substrate specificities, at 705,560 to 707,244 8666 mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707,483 to 708,587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709,223 to 712,870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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706,485 + 8666 mRNA_298 0.55 -0.0
706,614 - 8666 mRNA_298 0.63 +0.2
706,917 - 8666 mRNA_298 0.81 +0.2
707,073 - 8666 mRNA_298 0.90 -0.4
707,093 + +0.4
707,187 + -0.9
707,204 - +0.4
707,334 - +1.5
707,336 - -1.6
707,350 - -0.5
707,364 - -1.2
707,389 + +0.3
707,417 - -0.1
707,426 + +0.3
707,427 - -0.0
707,427 - -0.7
707,538 - -0.2
707,581 + -1.5
707,690 - 8667 mRNA_299 0.19 -0.7
707,691 - 8667 mRNA_299 0.19 -0.6
707,695 + 8667 mRNA_299 0.19 +0.7
707,696 + 8667 mRNA_299 0.19 -1.0
707,833 - 8667 mRNA_299 0.32 +0.2
707,838 + 8667 mRNA_299 0.32 -3.2
707,866 + 8667 mRNA_299 0.35 -0.8
708,024 + 8667 mRNA_299 0.49 -0.6
708,025 + 8667 mRNA_299 0.49 -2.2
708,158 - 8667 mRNA_299 0.61 -0.3
708,303 + 8667 mRNA_299 0.74 -1.0
708,490 - -0.0
708,731 - -0.3
708,734 - -0.2
708,734 + -0.4
709,004 + +0.1
709,028 + -0.3
709,138 - +0.9
709,159 - +0.1
709,180 + +0.3
709,188 - -0.9
709,215 + -0.0
709,243 - +1.0
709,317 - -1.1
709,342 + +0.4
709,443 - +0.1
709,474 - -0.1
709,502 + +0.0

Or see this region's nucleotide sequence