Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_312

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8679 and 8680 are separated by 283 nucleotides8680 and 8681 are separated by 248 nucleotides mRNA_311: 8679 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 737,521 to 741,046 8679 mRNA_312: 8680 - K20103 DDX60 ATP-dependent RNA helicase DDX60, at 741,330 to 747,566 8680 mRNA_313: 8681 - Hypothetical Protein, at 747,815 to 749,312 8681

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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740,440 - 8679 mRNA_311 0.83 -1.1
740,467 - 8679 mRNA_311 0.84 +0.3
740,595 - 8679 mRNA_311 0.87 -2.0
740,926 - +0.5
740,930 - +0.2
741,064 - -0.2
741,064 - +0.3
741,066 - +0.8
741,067 - +0.4
741,068 - -0.8
741,085 + -0.2
741,325 - -1.6
741,330 - +1.0
741,331 - -0.1
741,342 + +0.2
741,350 - +0.2
741,350 - -1.0
741,352 - +0.6
741,357 + -0.2
741,359 - +0.7
741,361 + -0.2
741,366 + -1.0
748,156 - 8681 mRNA_313 0.23 -1.2
748,328 + 8681 mRNA_313 0.34 -2.8

Or see this region's nucleotide sequence