Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_398

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8765 and 8766 are separated by 269 nucleotides8766 and 8767 are separated by 172 nucleotides mRNA_397: 8765 - SUPERFAMILY--SSF52047, at 924,312 to 925,720 8765 mRNA_398: 8766 - KOG1305 Amino acid transporter protein, at 925,990 to 928,121 8766 mRNA_399: 8767 - K06874 K06874 zinc finger protein, at 928,294 to 930,157 8767

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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924,994 + 8765 mRNA_397 0.48 -0.3
925,442 - 8765 mRNA_397 0.80 -0.0
925,578 - 8765 mRNA_397 0.90 +1.2
925,853 - -0.5
925,858 - +0.3
925,859 + +0.9
925,875 - -0.2
925,876 - +0.1
925,876 + +0.4
925,883 - -0.2
925,889 + -0.1
925,890 - +0.5
925,995 - -0.2
926,030 - +0.0
926,154 + +0.3
926,167 - +0.6
926,462 + 8766 mRNA_398 0.22 +0.6
926,556 + 8766 mRNA_398 0.27 +0.1
926,594 + 8766 mRNA_398 0.28 +0.3
926,615 - 8766 mRNA_398 0.29 -0.3
926,748 + 8766 mRNA_398 0.36 -0.4
926,773 + 8766 mRNA_398 0.37 +1.8
927,182 - 8766 mRNA_398 0.56 +0.1
927,194 + 8766 mRNA_398 0.56 -0.8
927,500 + 8766 mRNA_398 0.71 +0.2
928,090 + +0.3
928,105 + +0.2

Or see this region's nucleotide sequence