Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_487

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8854 and 8855 are separated by 283 nucleotides8855 and 8856 are separated by 216 nucleotides mRNA_486: 8854 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 1,157,048 to 1,157,778 8854 mRNA_487: 8855 - HMMPfam-Thioredoxin-PF00085,HMMPfam-PITH domain-PF06201,PRINTS-Thioredoxin family signature-PR00421,ProSitePatterns-Thioredoxin family active site.-PS00194,ProSiteProfiles-Thioredoxin domain profile.-PS51352,ProSiteProfiles-PITH domain profile.-PS51532,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF52833, at 1,158,062 to 1,159,223 8855 mRNA_488: 8856 - Hypothetical Protein, at 1,159,440 to 1,160,357 8856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,157,108 - -3.8
1,157,250 - 8854 mRNA_486 0.28 +0.0
1,157,415 - 8854 mRNA_486 0.50 -1.2
1,157,538 - 8854 mRNA_486 0.67 -0.6
1,157,822 + -1.4
1,157,834 + -0.4
1,158,124 + +1.2

Or see this region's nucleotide sequence