Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_536

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8903 and 8904 are separated by 205 nucleotides8904 and 8905 are separated by 401 nucleotides mRNA_535: 8903 - HMMPfam-Ribosomal protein S21-PF01165,TIGRFAM-S21p ribosomal protein S21-TIGR00030, at 1,272,701 to 1,273,396 8903 mRNA_536: 8904 - K09548 PFDN1 prefoldin subunit 1, at 1,273,602 to 1,274,230 8904 mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1,274,632 to 1,275,903 8905

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,272,695 - +1.6
1,273,538 - -1.4
1,273,543 - +0.2
1,273,545 + +0.6
1,273,546 + -0.6
1,273,549 - +0.3
1,273,551 + +0.4
1,273,682 + 8904 mRNA_536 0.13 -0.4
1,273,697 - 8904 mRNA_536 0.15 +0.2
1,273,697 - 8904 mRNA_536 0.15 -0.3
1,274,265 - -0.3
1,274,581 - +0.2
1,274,902 - 8905 mRNA_537 0.21 +0.6

Or see this region's nucleotide sequence