Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_591

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8958 and 8959 are separated by 114 nucleotides8959 and 8960 are separated by 126 nucleotides mRNA_590: 8958 - K05543 DUS2 tRNA-dihydrouridine synthase 2, at 1,414,639 to 1,416,336 8958 mRNA_591: 8959 - K01915 glnA, GLUL glutamine synthetase, at 1,416,451 to 1,418,413 8959 mRNA_592: 8960 - K10747 LIG1 DNA ligase 1, at 1,418,540 to 1,422,145 8960

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,416,242 - +0.2
1,416,854 - 8959 mRNA_591 0.21 +0.3
1,416,956 - 8959 mRNA_591 0.26 -0.1
1,417,446 + 8959 mRNA_591 0.51 +0.2
1,417,985 - 8959 mRNA_591 0.78 -0.3
1,418,011 + 8959 mRNA_591 0.79 -0.7
1,418,022 - 8959 mRNA_591 0.80 +1.1
1,418,151 - 8959 mRNA_591 0.87 -0.7
1,418,156 + 8959 mRNA_591 0.87 +0.3
1,418,159 + 8959 mRNA_591 0.87 -0.1
1,418,172 + 8959 mRNA_591 0.88 -1.9
1,418,195 + 8959 mRNA_591 0.89 +1.0
1,418,361 + -0.2
1,418,364 - +1.0
1,418,460 - -1.6
1,418,465 - +0.5
1,418,472 - -0.3
1,418,712 - +0.1
1,419,064 + 8960 mRNA_592 0.15 -0.5
1,419,075 + 8960 mRNA_592 0.15 +0.7
1,419,340 + 8960 mRNA_592 0.22 +0.8

Or see this region's nucleotide sequence