Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_720

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9087 and 9088 are separated by 779 nucleotides9088 and 9089 are separated by 115 nucleotides mRNA_719: 9087 - HMMPfam-Protein of unknown function (DUF3074)-PF11274, at 1,716,793 to 1,718,081 9087 mRNA_720: 9088 - K00993 EPT1 ethanolaminephosphotransferase, at 1,718,861 to 1,720,406 9088 mRNA_721: 9089 - Hypothetical Protein, at 1,720,522 to 1,720,982 9089

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,717,895 + 9087 mRNA_719 0.85 +2.3
1,718,011 + +1.1
1,718,319 - -0.9
1,718,324 + -1.0
1,718,651 + -0.6
1,718,750 + +1.4
1,719,008 - +0.3
1,719,168 + 9088 mRNA_720 0.20 -0.0
1,719,170 - 9088 mRNA_720 0.20 +1.0
1,719,224 - 9088 mRNA_720 0.23 -0.0
1,719,351 + 9088 mRNA_720 0.32 +0.3
1,719,625 - 9088 mRNA_720 0.49 -0.5
1,720,329 - +0.5
1,720,339 + -0.1
1,721,110 + +1.0
1,721,218 + +1.1
1,721,236 + +0.1
1,721,237 + -0.0
1,721,374 - +0.6

Or see this region's nucleotide sequence