Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_743

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9110 and 9111 are separated by 385 nucleotides9111 and 9112 are separated by 500 nucleotides mRNA_742: 9110 - HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784, at 1,774,415 to 1,775,869 9110 mRNA_743: 9111 - K08493 VTI1 vesicle transport through interaction with t-SNAREs 1, at 1,776,255 to 1,777,416 9111 mRNA_744: 9112 - KOG2533 Permease of the major facilitator superfamily, at 1,777,917 to 1,780,253 9112

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,775,365 + 9110 mRNA_742 0.65 +0.9
1,775,502 + 9110 mRNA_742 0.75 +1.1
1,775,891 - +1.2
1,775,895 - -0.3
1,775,915 + +2.3
1,776,053 + -1.4
1,776,055 - +0.1
1,776,063 + +0.6
1,776,063 - -1.6
1,776,395 + 9111 mRNA_743 0.12 -2.8
1,776,745 - 9111 mRNA_743 0.42 +0.9
1,776,850 + 9111 mRNA_743 0.51 +2.1
1,777,089 - 9111 mRNA_743 0.72 -1.7
1,777,454 + +0.3
1,777,529 - +0.3
1,777,560 + +0.3
1,777,791 - -1.6
1,777,793 + +0.1
1,777,802 + -0.3
1,777,811 + -0.2
1,777,812 + -0.7
1,777,814 - -0.8
1,777,816 + +1.7
1,777,821 - +0.4
1,777,821 - +0.2
1,777,821 - +1.2
1,777,828 + -0.7
1,777,832 + +0.2
1,777,841 + -0.2
1,777,865 - +0.4
1,777,890 + -1.4
1,777,970 + +0.5
1,777,981 + +0.6
1,778,001 - +0.4
1,778,043 - +1.4
1,778,197 - 9112 mRNA_744 0.12 -0.0
1,778,321 - 9112 mRNA_744 0.17 -1.3

Or see this region's nucleotide sequence