Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_745

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9112 and 9113 are separated by 197 nucleotides9113 and 9114 are separated by 332 nucleotides mRNA_744: 9112 - KOG2533 Permease of the major facilitator superfamily, at 1,777,917 to 1,780,253 9112 mRNA_745: 9113 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 1,780,451 to 1,782,779 9113 mRNA_746: 9114 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,783,112 to 1,784,758 9114

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,779,875 - 9112 mRNA_744 0.84 +1.2
1,780,114 + -0.9
1,780,117 - +0.6
1,780,375 + +1.2
1,780,573 + -0.6
1,780,575 - -0.6
1,780,707 + 9113 mRNA_745 0.11 +0.1
1,780,714 + 9113 mRNA_745 0.11 +0.3
1,780,784 - 9113 mRNA_745 0.14 +1.0
1,780,866 - 9113 mRNA_745 0.18 +0.4
1,781,264 + 9113 mRNA_745 0.35 -0.4
1,781,707 + 9113 mRNA_745 0.54 +0.1
1,782,079 - 9113 mRNA_745 0.70 +1.2
1,782,081 - 9113 mRNA_745 0.70 -0.4
1,782,119 + 9113 mRNA_745 0.72 +0.2
1,782,273 + 9113 mRNA_745 0.78 +0.5
1,782,551 - +0.1
1,782,555 + -0.2
1,782,559 - +0.9
1,782,568 + +0.4
1,782,578 + +0.0
1,782,579 - +0.4
1,782,580 - -0.0
1,782,585 - +0.7
1,782,592 + +0.6
1,782,680 - +0.9
1,782,864 + -0.2
1,782,865 + +0.7
1,782,866 + +0.6
1,782,871 - +0.1
1,782,877 - +0.3
1,782,885 + +0.8
1,782,887 - -0.1
1,782,893 + +0.7
1,782,917 - -0.2
1,782,948 + -0.1
1,783,188 + -0.1
1,783,191 - +1.0
1,783,197 + -0.4
1,783,305 + 9114 mRNA_746 0.12 +0.6
1,783,314 + 9114 mRNA_746 0.12 +0.7
1,783,317 + 9114 mRNA_746 0.12 +0.4
1,783,340 - 9114 mRNA_746 0.14 -0.1
1,783,349 - 9114 mRNA_746 0.14 +0.2
1,783,661 - 9114 mRNA_746 0.33 +0.2

Or see this region's nucleotide sequence