Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_783

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9151 and 9152 are separated by 315 nucleotides mRNA_783: 9151 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 1,864,111 to 1,866,017 9151 mRNA_784: 9152 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1,866,333 to 1,867,961 9152

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,863,293 - -0.1
1,863,494 + -0.0
1,863,760 - +0.8
1,863,763 - +0.8
1,863,766 - -0.1
1,863,921 - +0.3
1,863,929 + -0.1
1,863,940 + -0.8
1,864,095 + +1.0
1,864,098 - -0.2
1,864,202 - +2.0
1,864,220 + -0.3
1,864,224 - -0.7
1,864,229 - +0.7
1,864,326 + 9151 mRNA_783 0.11 -0.9
1,864,965 - 9151 mRNA_783 0.45 -0.2
1,865,368 - 9151 mRNA_783 0.66 +0.5
1,865,399 + 9151 mRNA_783 0.68 -0.2
1,865,798 + 9151 mRNA_783 0.88 -1.4
1,865,810 - 9151 mRNA_783 0.89 +0.1
1,865,839 + +0.6
1,865,972 + +0.9
1,866,044 - +0.9
1,866,096 + -0.5
1,866,106 - -0.3
1,866,552 - 9152 mRNA_784 0.13 -0.0
1,866,553 - 9152 mRNA_784 0.14 +0.5
1,866,555 - 9152 mRNA_784 0.14 +1.2
1,866,559 + 9152 mRNA_784 0.14 +0.7
1,866,974 - 9152 mRNA_784 0.39 -0.9

Or see this region's nucleotide sequence