Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_959

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9326 and 9327 are separated by 182 nucleotides9327 and 9328 are separated by 618 nucleotides mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68,505 to 72,950 9326 mRNA_959: 9327 - Hypothetical Protein, at 73,133 to 74,885 9327 mRNA_960: 9328 - K20409 WDR59 WD repeat-containing protein 59, at 75,504 to 80,689 9328

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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72,183 - 9326 mRNA_958 0.83 -0.2
72,340 + 9326 mRNA_958 0.86 +1.7
72,875 - -0.8
72,910 + +0.3
72,924 + +0.5
72,926 + +0.2
72,928 - -1.8
73,084 + -0.6
73,203 - -1.0
73,678 + 9327 mRNA_959 0.31 +0.1
73,722 + 9327 mRNA_959 0.34 -0.1
73,780 - 9327 mRNA_959 0.37 -0.3
73,945 - 9327 mRNA_959 0.46 +0.5
73,953 + 9327 mRNA_959 0.47 -0.4
73,964 + 9327 mRNA_959 0.47 -0.3
74,251 + 9327 mRNA_959 0.64 +0.1
74,400 - 9327 mRNA_959 0.72 +0.8
74,515 - 9327 mRNA_959 0.79 -0.1
74,797 - +0.4
74,805 - +1.1
74,832 + +0.9
74,833 + -2.1
74,836 + +0.6
74,966 + -0.0
74,985 - -1.4
75,097 - -0.0
75,098 - +0.1
75,108 - +0.1
75,113 - +0.3
75,131 - -0.1
75,142 + +0.1
75,144 - +0.6
75,249 - +0.9
75,290 + -0.2
75,435 - +1.5
75,441 - +0.2
75,457 + -1.1
75,562 - +0.7
75,579 + -0.4
75,699 + -0.9
75,857 - +0.6

Or see this region's nucleotide sequence