Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_964

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9331 and 9332 are separated by 810 nucleotides9332 and 9333 are separated by 661 nucleotides mRNA_963: 9331 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 84,124 to 85,910 9331 mRNA_964: 9332 - Hypothetical Protein, at 86,721 to 89,416 9332 mRNA_965: 9333 - Hypothetical Protein, at 90,078 to 91,448 9333

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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85,857 - -2.2
85,974 - -0.9
85,975 + -0.5
85,986 + -0.7
85,991 - -1.0
86,007 + +0.3
86,013 + +0.0
86,013 + +0.3
86,019 + +0.6
86,022 + -0.6
86,073 - +0.5
86,083 - +0.9
86,089 - -0.5
86,090 + +0.6
86,094 + -0.6
86,095 + +0.8
86,097 + +1.3
86,104 - +0.6
86,108 + +0.2
86,119 + -2.0
86,124 - -0.5
86,130 + +0.7
86,132 + +0.6
86,133 + -1.8
86,138 - -0.8
86,140 - +0.6
86,266 + -1.3
86,420 + +0.4
86,477 + -0.1
86,595 + +0.2
86,661 + +0.9
86,881 + +0.5
87,150 + 9332 mRNA_964 0.16 +1.6
87,158 - 9332 mRNA_964 0.16 +0.3
87,176 - 9332 mRNA_964 0.17 +0.0
87,348 - 9332 mRNA_964 0.23 -0.6
87,650 - 9332 mRNA_964 0.34 -0.3
87,910 + 9332 mRNA_964 0.44 +1.8
88,019 + 9332 mRNA_964 0.48 +0.6
88,039 + 9332 mRNA_964 0.49 +1.6
88,066 - 9332 mRNA_964 0.50 -0.8
88,188 + 9332 mRNA_964 0.54 +0.2
88,193 + 9332 mRNA_964 0.55 +0.7
88,199 + 9332 mRNA_964 0.55 -0.7
88,592 - 9332 mRNA_964 0.69 +1.3
88,595 + 9332 mRNA_964 0.70 +0.1
88,741 + 9332 mRNA_964 0.75 -0.2
88,859 - 9332 mRNA_964 0.79 +0.4
88,882 + 9332 mRNA_964 0.80 +1.5
89,065 - 9332 mRNA_964 0.87 +0.4
89,170 + +0.1
89,229 - +0.9
89,508 - +0.2
89,684 + -0.4
89,863 - -0.9
89,949 + -0.1
90,054 - -1.2
90,054 + +0.1
90,189 + +0.5
90,191 - -0.2
90,336 - 9333 mRNA_965 0.19 +0.3

Or see this region's nucleotide sequence