Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1011

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9379 and 9380 are separated by 487 nucleotides mRNA_1011: 9379 - Hypothetical Protein, at 203,072 to 203,287 9379 mRNA_1012: 9380 - Hypothetical Protein, at 203,775 to 207,320 9380

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
202,107 - +0.4
202,111 - +0.8
202,112 + +0.4
202,135 + -0.4
202,142 - +0.0
202,251 - -0.6
202,275 + -1.0
202,316 + -0.4
202,321 + -0.3
202,340 + -0.6
202,415 - -0.0
202,421 + +1.0
202,455 + +0.3
202,465 - -0.4
202,473 + +0.4
202,478 - -1.1
202,480 + -0.2
202,484 + +0.8
202,491 - +0.4
202,497 + -0.7
202,497 + +1.1
202,505 + +0.3
202,514 + +0.7
202,514 + +0.8
202,516 - +1.7
202,520 - -0.5
202,536 + +0.7
202,537 + -0.4
202,538 + +0.1
202,540 - -3.0
202,540 - -0.5
202,564 + +0.8
202,570 - -1.0
202,610 + -0.9
202,672 - +1.8
202,673 - -1.3
202,675 - +0.5
202,678 + +0.4
202,681 + +0.9
202,683 - -1.5
202,685 - -2.8
202,690 - +0.2
202,695 - +0.2
202,704 + -0.3
202,710 + -0.5
202,715 + +1.2
202,742 - -0.6
202,762 - -2.2
202,834 - +0.4
202,839 - +0.3
202,858 + +0.5
202,865 + +0.3
203,032 - -0.1
203,033 + +0.2
203,035 - -0.5
203,036 + -0.2
203,101 - 9379 mRNA_1011 0.13 +1.3
203,126 - 9379 mRNA_1011 0.25 -0.2
203,131 - 9379 mRNA_1011 0.27 -0.7
203,141 + 9379 mRNA_1011 0.32 -0.3
203,152 + 9379 mRNA_1011 0.37 +0.0
203,154 - 9379 mRNA_1011 0.38 -0.2
203,229 - 9379 mRNA_1011 0.73 -0.3
203,285 + -0.1
203,299 + -0.7
203,306 + -0.8
203,310 + -1.4
203,312 - -0.1
203,314 - -0.1
203,315 + -1.2
203,370 - -0.6
203,415 + +0.5
203,421 + -1.1
203,702 - +0.5
203,837 + -0.4
203,890 - +0.9

Or see this region's nucleotide sequence