Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1236

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9603 and 9604 are separated by 491 nucleotides9604 and 9605 are separated by 271 nucleotides mRNA_1235: 9603 - K12818 DHX8, PRP22 ATP-dependent RNA helicase DHX8/PRP22, at 716,185 to 721,769 9603 mRNA_1236: 9604 - K02377 TSTA3, fcl GDP-L-fucose synthase, at 722,261 to 724,161 9604 mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724,433 to 725,551 9605

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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721,900 - +0.6
722,058 + -0.4
722,097 - +0.3
722,114 - +0.1
722,169 - +0.2
722,176 - -0.2
722,177 - -0.1
722,179 - +0.5
722,179 - -0.3
722,180 + -2.9
722,194 + +0.5
722,199 - +0.9
722,201 + -0.2
722,211 - -0.3
722,216 - +0.1
722,680 - 9604 mRNA_1236 0.22 -0.4
724,220 - +0.1
724,390 - -0.6
724,421 - +0.5
724,700 - 9605 mRNA_1237 0.24 -2.5
724,708 + 9605 mRNA_1237 0.25 +0.3
724,710 - 9605 mRNA_1237 0.25 -0.4
724,719 + 9605 mRNA_1237 0.26 -0.7
724,797 + 9605 mRNA_1237 0.33 +0.3
724,809 + 9605 mRNA_1237 0.34 -4.7
724,816 + 9605 mRNA_1237 0.34 +1.4
724,817 - 9605 mRNA_1237 0.34 -0.4
725,009 + 9605 mRNA_1237 0.51 -0.8
725,143 + 9605 mRNA_1237 0.63 +0.7

Or see this region's nucleotide sequence