Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1249

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9616 and 9617 are separated by 526 nucleotides mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747,049 to 750,301 9616 mRNA_1249: 9617 - Hypothetical Protein, at 750,828 to 752,844 9617

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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749,881 + 9616 mRNA_1248 0.87 +1.8
749,913 - 9616 mRNA_1248 0.88 +0.5
749,932 - 9616 mRNA_1248 0.89 +0.0
749,933 + 9616 mRNA_1248 0.89 -0.4
750,023 - +0.3
750,056 - -0.3
750,125 - -0.3
750,154 - +1.3
750,158 - -0.6
750,184 - -0.7
750,204 - +0.7
750,213 - +0.3
750,217 - +0.7
750,220 + +1.8
750,226 - -0.7
750,328 - +0.5
750,469 + +0.3
750,496 - +0.2
750,506 + +0.4
750,559 + -0.4
750,570 + +0.2
750,660 + -0.9
750,690 + +0.8
750,824 + +1.2
750,838 - +1.5
751,275 + 9617 mRNA_1249 0.22 -0.0
751,532 + 9617 mRNA_1249 0.35 +0.9
751,536 - 9617 mRNA_1249 0.35 -0.7
751,690 + 9617 mRNA_1249 0.43 -0.3
752,394 + 9617 mRNA_1249 0.78 -0.7
752,519 + 9617 mRNA_1249 0.84 +0.5
752,531 + 9617 mRNA_1249 0.84 -0.0
752,668 + +1.2
752,732 + +1.3
752,837 - -0.8
752,844 + +0.3
752,851 - +0.2
752,973 - -0.7
752,973 - -1.1
752,977 + -0.1
752,984 + +0.6
753,002 + +0.7
753,114 - +0.1
753,115 - -0.1
753,117 - -0.3
753,122 - -0.2
753,122 - +0.6
753,126 + -1.1
753,138 - -1.9
753,138 - -0.5
753,145 - -0.2
753,150 - -1.0
753,264 + -1.3
753,269 + +0.1
753,393 + +0.4
753,406 - +1.1
753,416 + -0.8
753,426 + -0.1
753,438 + -0.7
753,450 + -0.7
753,719 - -0.1

Or see this region's nucleotide sequence