Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1256

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9623 and 9624 are separated by 293 nucleotides9624 and 9625 are separated by 447 nucleotides mRNA_1255: 9623 - KOG1808 AAA ATPase containing von Willebrand factor type A (vWA) domain, at 762,538 to 767,686 9623 mRNA_1256: 9624 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 767,980 to 768,375 9624 mRNA_1257: 9625 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 768,823 to 770,242 9625

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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767,011 + 9623 mRNA_1255 0.87 +0.1
767,045 - 9623 mRNA_1255 0.88 -0.9
767,126 - 9623 mRNA_1255 0.89 +0.2
767,350 - -0.8
767,470 - -0.6
767,726 - +0.4
767,750 + +0.2
767,910 + +0.1
767,914 - -1.3
768,001 + +1.5
768,011 + -0.4
768,383 - -0.0
768,531 - +0.1
768,537 + +0.6
768,631 + +0.4
768,753 + -0.3
768,768 + -0.3
769,036 - 9625 mRNA_1257 0.15 -0.2
769,095 - 9625 mRNA_1257 0.19 -0.5
769,212 + 9625 mRNA_1257 0.27 -1.2
769,362 - 9625 mRNA_1257 0.38 -0.4
769,369 + 9625 mRNA_1257 0.38 +0.4
769,371 - 9625 mRNA_1257 0.39 +0.7

Or see this region's nucleotide sequence