Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1264

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9631 and 9632 are separated by 471 nucleotides9632 and 9633 are separated by 83 nucleotides mRNA_1263: 9631 - K06130 LYPLA2 lysophospholipase II, at 782,267 to 783,226 9631 mRNA_1264: 9632 - HMMPfam-Mitochondrial ribosomal protein subunit L20-PF12824, at 783,698 to 784,459 9632 mRNA_1265: 9633 - K14861 URB1 nucleolar pre-ribosomal-associated protein 1, at 784,543 to 790,877 9633

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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782,909 + 9631 mRNA_1263 0.67 +0.0
783,049 - 9631 mRNA_1263 0.81 -0.4
783,085 - 9631 mRNA_1263 0.85 +0.9
783,098 + 9631 mRNA_1263 0.87 +0.0
783,217 - +0.7
783,363 + +0.2
783,489 - -0.2
783,615 - -0.2
783,625 - -0.1
783,709 - +0.6
784,354 + 9632 mRNA_1264 0.86 +0.5
784,355 + 9632 mRNA_1264 0.86 +0.6
784,358 - 9632 mRNA_1264 0.87 +0.5
784,358 + 9632 mRNA_1264 0.87 +0.2
784,359 - 9632 mRNA_1264 0.87 -0.7
784,363 + 9632 mRNA_1264 0.87 -0.6
784,372 - 9632 mRNA_1264 0.88 +0.6
784,381 + 9632 mRNA_1264 0.90 +0.8
784,415 - -0.6
784,489 - +0.2
784,526 + +1.8

Or see this region's nucleotide sequence