Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1399

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9767 and 9768 are separated by 586 nucleotides mRNA_1399: 9767 - Hypothetical Protein, at 179,296 to 180,900 9767 mRNA_1400: 9768 - K20360 TBC1D22, GYP1 TBC1 domain family member 2, at 181,487 to 184,184 9768

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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178,468 - -0.8
178,500 + -0.8
178,929 + -0.1
179,524 + 9767 mRNA_1399 0.14 +0.9
179,534 + 9767 mRNA_1399 0.15 +0.5
179,650 - 9767 mRNA_1399 0.22 -0.7
179,965 - 9767 mRNA_1399 0.42 -1.5
180,172 - 9767 mRNA_1399 0.55 +0.5
180,270 - 9767 mRNA_1399 0.61 -0.5
180,397 + 9767 mRNA_1399 0.69 -0.5
180,539 + 9767 mRNA_1399 0.77 +0.6
180,701 + 9767 mRNA_1399 0.88 +0.6
181,106 - +1.1
181,672 - -1.2
181,698 + -0.2
181,728 + +0.3
181,848 - 9768 mRNA_1400 0.13 +0.5
181,854 + 9768 mRNA_1400 0.14 -1.0

Or see this region's nucleotide sequence