Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1454

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9821 and 9822 are separated by 158 nucleotides9822 and 9823 are separated by 192 nucleotides mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328,591 to 330,027 9821 mRNA_1454: 9822 - K11390 CLYBL citrate lyase subunit beta-like protein, at 330,186 to 331,593 9822 mRNA_1455: 9823 - BLAST patatin-like phospholipase domain protein [Rhizoctoni..., at 331,786 to 334,001 9823

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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329,236 + 9821 mRNA_1453 0.45 +0.8
329,558 - 9821 mRNA_1453 0.67 -0.3
329,681 - 9821 mRNA_1453 0.76 -0.4
330,128 - -0.2
330,251 - -0.5
330,255 + -0.5
330,263 - +0.2
330,268 + +0.1
330,275 + -1.7
330,707 + 9822 mRNA_1454 0.37 -0.3
331,421 + 9822 mRNA_1454 0.88 +0.2
332,302 - 9823 mRNA_1455 0.23 -1.1
332,303 + 9823 mRNA_1455 0.23 -0.9

Or see this region's nucleotide sequence