Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1525

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9892 and 9893 are separated by 133 nucleotides9893 and 9894 are separated by 387 nucleotides mRNA_1524: 9892 - K07178 RIOK1 RIO kinase 1, at 505,162 to 507,225 9892 mRNA_1525: 9893 - K08267 RICTOR rapamycin-insensitive companion of mTOR, at 507,359 to 512,878 9893 mRNA_1526: 9894 - K02880 RP-L17e, RPL17 large subunit ribosomal protein L17e, at 513,266 to 514,362 9894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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507,286 - +1.1
507,310 + -0.5
507,353 - -0.0
507,495 - +0.4
513,042 - -0.1
513,043 + +1.6
513,043 + -2.1
513,064 + -0.4

Or see this region's nucleotide sequence