Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1546

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9913 and 9914 are separated by 485 nucleotides9914 and 9915 are separated by 103 nucleotides mRNA_1545: 9913 - Hypothetical Protein, at 558,416 to 558,832 9913 mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559,318 to 562,481 9914 mRNA_1547: 9915 - K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2, at 562,585 to 566,021 9915

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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558,332 - -0.9
558,349 + -0.5
558,350 - +0.7
558,483 + 9913 mRNA_1545 0.16 +0.1
558,509 - 9913 mRNA_1545 0.22 -0.7
558,648 + 9913 mRNA_1545 0.56 +0.4
558,781 + 9913 mRNA_1545 0.88 +0.0
558,928 + -2.4
559,080 + +0.5
559,088 + +0.2
559,144 - -2.1
559,216 + -2.0
559,242 - -2.1
559,347 - +1.0
559,365 - -0.8
559,391 - -1.5
559,674 + 9914 mRNA_1546 0.11 -1.3
561,259 - 9914 mRNA_1546 0.61 -2.3
562,082 - 9914 mRNA_1546 0.87 +0.1
562,104 - 9914 mRNA_1546 0.88 -0.9
562,407 - +0.1
562,518 + -0.3

Or see this region's nucleotide sequence