Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1632

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10000 and 10001 are separated by 740 nucleotides mRNA_1632: 10000 - K00036 G6PD, zwf glucose-6-phosphate 1-dehydrogenase, at 760,062 to 761,705 10000 mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135 10001

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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759,158 + +0.4
759,159 - +0.8
759,175 - +0.0
759,178 - +0.3
759,184 - -2.4
759,186 - +1.2
759,188 - +0.6
759,193 - +1.4
759,197 - -0.7
759,203 + +0.3
761,918 - -0.2
761,932 - +0.6
761,940 + +1.3
761,963 + +2.0
762,101 + +0.0
762,235 - +0.4
762,240 - +0.8
762,250 + +0.2
762,282 - +1.5
762,295 + +1.4

Or see this region's nucleotide sequence