Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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26 + +1.1
27 + +0.6
28 + -0.2
31 + +1.1
31 + -0.6
41 + -0.2
66 + +0.6
72 - -0.3
72 - -0.2
93 + -0.4
104 + +0.5
105 + +0.4
108 + -0.1
120 - -1.8
128 + +0.1
135 - -1.1
136 + +0.3
136 - -0.9
137 - +1.6
137 - -0.8
138 + +0.3
139 + -0.7
141 - -1.9
150 - +0.9
151 - -1.3
155 + -0.4
155 + +0.3
156 + -1.3
158 + -0.1
173 - +0.4
175 + +0.8
180 - -2.3
215 + +0.1
220 - -2.0
234 + +1.0
254 - -0.0
283 + +1.0
304 + -0.9
322 + +1.7
324 + +0.4
427 + -0.1
453 + 10074 mRNA_1706 0.13 +0.9
465 - 10074 mRNA_1706 0.14 +0.4
482 + 10074 mRNA_1706 0.16 +0.5
493 - 10074 mRNA_1706 0.18 -0.1
647 + 10074 mRNA_1706 0.36 +0.8
683 - 10074 mRNA_1706 0.40 +1.3
809 + 10074 mRNA_1706 0.55 +1.4
842 - 10074 mRNA_1706 0.59 -0.1
844 + 10074 mRNA_1706 0.59 -0.2
848 - 10074 mRNA_1706 0.59 +1.8
902 + 10074 mRNA_1706 0.66 +1.5
949 - 10074 mRNA_1706 0.71 -1.7
949 - 10074 mRNA_1706 0.71 -0.9
950 + 10074 mRNA_1706 0.71 +0.6
974 - 10074 mRNA_1706 0.74 +0.3
1,016 + 10074 mRNA_1706 0.79 +0.3
1,065 + 10074 mRNA_1706 0.85 -2.2
1,118 + +1.7
1,142 + +0.8
1,155 + +1.1
1,272 - +1.0
1,281 + +1.3
1,573 + 10075 mRNA_1707 0.23 +1.2
1,625 + 10075 mRNA_1707 0.27 -1.4
1,625 + 10075 mRNA_1707 0.27 +1.2
1,628 + 10075 mRNA_1707 0.27 -0.0
1,646 + 10075 mRNA_1707 0.28 +1.6
1,649 - 10075 mRNA_1707 0.28 +0.3
1,680 + 10075 mRNA_1707 0.30 +0.2
1,781 + 10075 mRNA_1707 0.36 +0.8
1,926 + 10075 mRNA_1707 0.45 +0.5
1,996 + 10075 mRNA_1707 0.49 +0.6
2,005 - 10075 mRNA_1707 0.50 -0.2
2,010 - 10075 mRNA_1707 0.50 +0.4
2,033 + 10075 mRNA_1707 0.51 +0.9
2,068 + 10075 mRNA_1707 0.53 +1.7
2,076 + 10075 mRNA_1707 0.54 -1.1

Or see this region's nucleotide sequence