Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1723

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10091 and 10092 are separated by 619 nucleotides mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38,655 to 42,471 10091 mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43,091 to 44,788 10092

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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37,660 + -0.5
37,703 - -0.3
37,717 - -0.5
37,735 - +0.5
37,831 - +0.2
37,837 + -1.3
37,921 - -1.6
37,933 - +0.4
37,934 + +1.2
37,934 + -2.3
37,938 + +0.0
37,950 - +0.7
37,951 + -1.7
37,984 - +0.0
38,063 + -1.0
38,063 - +0.5
38,074 - -1.2
38,075 - -0.3
38,083 + +0.4
38,091 - -1.4
38,140 - +0.2
38,248 - -0.1
38,249 - -0.1
38,366 + +1.3
38,384 + -1.1
38,409 + -0.5
38,409 + -0.5
38,929 - +0.4
38,939 + +0.0
38,940 - +0.7
38,963 + +0.9
39,081 + 10091 mRNA_1723 0.11 -0.8
39,111 + 10091 mRNA_1723 0.12 +1.4
39,362 - 10091 mRNA_1723 0.19 -1.8
39,532 + 10091 mRNA_1723 0.23 +0.2
39,581 + 10091 mRNA_1723 0.24 -0.4
39,873 + 10091 mRNA_1723 0.32 -0.0
40,035 - 10091 mRNA_1723 0.36 +0.8
40,066 - 10091 mRNA_1723 0.37 +0.8
40,393 + 10091 mRNA_1723 0.46 -0.7
40,399 + 10091 mRNA_1723 0.46 +1.0
40,404 - 10091 mRNA_1723 0.46 -0.1
40,421 + 10091 mRNA_1723 0.46 -0.0
40,498 - 10091 mRNA_1723 0.48 +0.2
40,691 + 10091 mRNA_1723 0.53 +0.2
41,019 - 10091 mRNA_1723 0.62 +0.3
41,144 - 10091 mRNA_1723 0.65 +0.5
41,221 - 10091 mRNA_1723 0.67 +0.2
41,286 + 10091 mRNA_1723 0.69 -0.0
41,447 + 10091 mRNA_1723 0.73 -0.1
41,552 + 10091 mRNA_1723 0.76 -1.9
41,624 + 10091 mRNA_1723 0.78 +0.8
41,733 - 10091 mRNA_1723 0.81 +1.7
41,872 + 10091 mRNA_1723 0.84 +1.2
41,929 + 10091 mRNA_1723 0.86 -0.8
41,957 - 10091 mRNA_1723 0.87 +0.2
41,973 + 10091 mRNA_1723 0.87 +0.6
42,146 + -0.1
42,171 + +0.0
42,198 + +0.2
42,285 - -0.4
42,287 - -1.4
42,298 + -0.2
42,311 + +0.6
42,354 - +0.1
42,357 - -0.5
42,445 - +0.4
42,592 - -0.4
42,597 + +0.9
42,614 - +1.7
42,623 + +1.0
42,627 - +0.4
42,632 + +1.1
42,637 - -0.6
42,637 - +0.2
42,638 + +0.9
42,644 + -0.9
42,650 + +0.2
42,652 - -0.4
42,660 + -1.1
42,677 - -0.9
42,684 - +0.4
42,714 - -2.6
42,717 + -0.2
42,729 + +0.4
42,737 - +0.6
42,769 - -1.1
42,778 - +1.1
42,782 + +0.1
42,788 + -0.7
42,808 - +1.2
42,824 - +0.8
42,825 + +0.2
42,825 - -0.8
42,826 - -0.3
42,829 + +1.3
42,832 + +0.1
42,839 + +0.1
42,845 - +0.2
42,846 - +1.1
42,847 - +1.1
42,847 - -2.1
42,868 + +1.0
42,874 + +0.1
42,901 + +0.5
42,912 - +0.8
42,923 - +0.5
42,925 - -0.5
42,999 - -0.2
43,027 - -2.7
43,050 + -0.5

Or see this region's nucleotide sequence