Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1759

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10127 and 10128 are separated by 429 nucleotides mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132,751 to 134,282 10127 mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134,712 to 138,303 10128

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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131,830 - +0.9
131,833 - +1.2
131,859 + +1.7
131,987 + -0.5
131,998 - +0.1
132,026 + -0.1
132,157 - -1.9
132,305 + +0.3
132,731 + -0.3
134,295 - +0.4
134,307 + +0.1
134,324 + +0.1
134,613 - -1.8
134,614 + -1.0

Or see this region's nucleotide sequence