Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1764

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10131 and 10132 are separated by 153 nucleotides10132 and 10133 are separated by 206 nucleotides mRNA_1763: 10131 - Hypothetical Protein, at 145,443 to 147,690 10131 mRNA_1764: 10132 - KOG0867 Glutathione S-transferase, at 147,844 to 149,167 10132 mRNA_1765: 10133 - HMMPfam-FUN14 family-PF04930, at 149,374 to 150,218 10133

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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146,871 - 10131 mRNA_1763 0.64 -0.7
146,928 + 10131 mRNA_1763 0.66 +0.6
146,977 - 10131 mRNA_1763 0.68 -0.2
147,441 + 10131 mRNA_1763 0.89 +0.1
147,460 + 10131 mRNA_1763 0.90 +0.4
147,550 - +0.9
147,707 + -0.5
147,857 - +1.5
147,994 - 10132 mRNA_1764 0.11 -1.2
148,605 + 10132 mRNA_1764 0.57 -0.3
148,781 + 10132 mRNA_1764 0.71 -1.9
148,785 - 10132 mRNA_1764 0.71 -0.1
148,791 + 10132 mRNA_1764 0.72 +0.9
148,858 + 10132 mRNA_1764 0.77 -0.3
148,898 - 10132 mRNA_1764 0.80 +0.0
149,051 - +0.2
149,057 - -1.9
149,072 + -0.5
149,215 - +0.0
149,218 + +1.6
149,239 - -0.2
149,250 - +0.4
149,263 + -1.3
149,272 + +2.1
149,359 + +1.2
149,457 + -0.7
149,684 + 10133 mRNA_1765 0.37 +0.5
149,800 - 10133 mRNA_1765 0.50 -0.1
149,801 + 10133 mRNA_1765 0.51 -0.0
149,936 + 10133 mRNA_1765 0.67 +0.7
149,962 - 10133 mRNA_1765 0.70 -1.4
150,065 + 10133 mRNA_1765 0.82 +1.0
150,117 + 10133 mRNA_1765 0.88 -0.6

Or see this region's nucleotide sequence