Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1765

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10132 and 10133 are separated by 206 nucleotides mRNA_1764: 10132 - KOG0867 Glutathione S-transferase, at 147,844 to 149,167 10132 mRNA_1765: 10133 - HMMPfam-FUN14 family-PF04930, at 149,374 to 150,218 10133

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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148,605 + 10132 mRNA_1764 0.57 -0.3
148,781 + 10132 mRNA_1764 0.71 -1.9
148,785 - 10132 mRNA_1764 0.71 -0.1
148,791 + 10132 mRNA_1764 0.72 +0.9
148,858 + 10132 mRNA_1764 0.77 -0.3
148,898 - 10132 mRNA_1764 0.80 +0.0
149,051 - +0.2
149,057 - -1.9
149,072 + -0.5
149,215 - +0.0
149,218 + +1.6
149,239 - -0.2
149,250 - +0.4
149,263 + -1.3
149,272 + +2.1
149,359 + +1.2
149,457 + -0.7
149,684 + 10133 mRNA_1765 0.37 +0.5
149,800 - 10133 mRNA_1765 0.50 -0.1
149,801 + 10133 mRNA_1765 0.51 -0.0
149,936 + 10133 mRNA_1765 0.67 +0.7
149,962 - 10133 mRNA_1765 0.70 -1.4
150,065 + 10133 mRNA_1765 0.82 +1.0
150,117 + 10133 mRNA_1765 0.88 -0.6
150,176 + +0.6
150,267 + -2.1
150,400 + -0.0
150,416 + +0.7
150,651 - +1.7
150,900 + -0.9
150,960 - -0.1
151,019 - -0.3
151,027 - +0.2
151,035 + -0.2
151,129 + +0.5
151,146 + +0.1
151,157 + -0.0
151,163 + -0.9
151,168 + +0.2

Or see this region's nucleotide sequence