Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1818

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10185 and 10186 are separated by 358 nucleotides10186 and 10187 are separated by 284 nucleotides mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285,247 to 286,558 10185 mRNA_1818: 10186 - Hypothetical Protein, at 286,917 to 287,591 10186 mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287,876 to 290,451 10187

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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286,669 - -0.9
286,677 + -0.8
286,696 + +1.0
286,697 + +0.9
286,701 + -2.1
286,728 + +0.3
286,807 - -2.2
286,825 - +0.5
286,825 - +1.2
286,839 - +0.4
286,841 - -0.3
286,841 - -0.8
286,849 - -0.8
286,849 - -1.7
286,852 - -1.2
286,855 - -2.1
286,862 - +0.3
286,871 + +0.2
286,887 + +0.4
287,167 + 10186 mRNA_1818 0.37 -0.1
287,172 - 10186 mRNA_1818 0.38 +1.4
287,175 + 10186 mRNA_1818 0.38 +1.5
287,196 - 10186 mRNA_1818 0.41 -0.7
287,199 + 10186 mRNA_1818 0.42 +1.0
287,311 - 10186 mRNA_1818 0.58 -0.1
287,331 - 10186 mRNA_1818 0.61 +0.4
287,335 - 10186 mRNA_1818 0.62 +0.5
287,359 - 10186 mRNA_1818 0.65 -0.1
287,382 + 10186 mRNA_1818 0.69 +0.6
287,395 + 10186 mRNA_1818 0.71 -0.8
287,400 - 10186 mRNA_1818 0.72 -0.6
287,403 + 10186 mRNA_1818 0.72 -0.9
287,406 + 10186 mRNA_1818 0.72 -1.3
287,489 + 10186 mRNA_1818 0.85 +0.4
287,533 + -0.8
287,645 + -1.1
287,654 - +0.6
287,656 + +2.3
287,660 - -0.4
287,712 - -0.2
287,721 + +0.3
287,778 - -0.8
287,778 + +0.4
287,778 + +1.5
287,795 + +0.7
287,803 + -1.5
287,853 - -0.4
287,967 + -0.5
287,995 - +0.4
288,007 - +1.1
288,010 + -0.2
288,014 + -0.6
288,017 - +0.4
288,018 + -1.3
288,019 + +0.1
288,037 + +0.6
288,151 + 10187 mRNA_1819 0.11 +1.3
288,164 + 10187 mRNA_1819 0.11 -0.3
288,171 + 10187 mRNA_1819 0.11 +0.3
288,472 + 10187 mRNA_1819 0.23 +0.8
288,479 + 10187 mRNA_1819 0.23 +0.2
288,497 + 10187 mRNA_1819 0.24 -0.5

Or see this region's nucleotide sequence