Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1843

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10210 and 10211 are separated by 322 nucleotides10211 and 10212 are separated by 230 nucleotides mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344,816 to 347,199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347,522 to 353,659 10211 mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353,890 to 355,492 10212

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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346,774 + 10210 mRNA_1842 0.82 +0.6
346,782 - 10210 mRNA_1842 0.82 -0.4
346,910 - 10210 mRNA_1842 0.88 -1.5
346,921 + 10210 mRNA_1842 0.88 +0.1
346,924 - 10210 mRNA_1842 0.88 -0.6
347,075 + +0.5
347,187 - -1.2
347,214 + +1.6
347,335 + +0.8
347,346 - +0.5
347,361 - -0.3
347,363 - -0.2
347,365 + +0.7
347,371 - -0.3
347,401 - +0.1
347,515 + +1.9
347,525 + -0.2
347,529 - +1.4
347,676 - +0.9
347,794 - +1.1
347,806 + +0.3
347,832 + +0.2
347,836 + +0.1
347,949 - -1.9
347,955 + -0.1
348,222 + 10211 mRNA_1843 0.11 +0.8
348,268 - 10211 mRNA_1843 0.12 +0.4
348,360 - 10211 mRNA_1843 0.14 +0.5
348,398 + 10211 mRNA_1843 0.14 +0.0
348,406 + 10211 mRNA_1843 0.14 +0.8
348,686 + 10211 mRNA_1843 0.19 -1.6
348,701 + 10211 mRNA_1843 0.19 +2.1
349,262 + 10211 mRNA_1843 0.28 +0.5
349,452 + 10211 mRNA_1843 0.31 -0.5
349,530 - 10211 mRNA_1843 0.33 -0.5
349,549 + 10211 mRNA_1843 0.33 -0.2
349,572 + 10211 mRNA_1843 0.33 +1.9
349,588 + 10211 mRNA_1843 0.34 -0.5
349,712 - 10211 mRNA_1843 0.36 -2.5
349,807 - 10211 mRNA_1843 0.37 +0.3
350,158 + 10211 mRNA_1843 0.43 +0.0
351,293 - 10211 mRNA_1843 0.61 +0.6
352,105 + 10211 mRNA_1843 0.75 -0.5
352,402 - 10211 mRNA_1843 0.80 +1.8
352,780 - 10211 mRNA_1843 0.86 -0.5
352,896 - 10211 mRNA_1843 0.88 -1.7
352,923 - 10211 mRNA_1843 0.88 +1.4
352,928 + 10211 mRNA_1843 0.88 -0.6
353,169 - +1.2
353,520 - +0.5
353,688 - +0.6
353,690 - +0.9
353,809 + -0.2
353,811 + +0.2
353,818 - -0.2
353,821 - +0.7
353,822 + +0.4
353,835 - +0.2
353,875 - -0.0
354,073 - 10212 mRNA_1844 0.11 -0.4

Or see this region's nucleotide sequence