Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1849

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10216 and 10217 are separated by 251 nucleotides mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362,950 to 364,987 10216 mRNA_1849: 10217 - Hypothetical Protein, at 365,239 to 367,490 10217

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
364,241 - 10216 mRNA_1848 0.63 +1.5
364,403 - 10216 mRNA_1848 0.71 +0.3
364,535 + 10216 mRNA_1848 0.78 -1.9
364,576 + 10216 mRNA_1848 0.80 -2.1
364,707 + 10216 mRNA_1848 0.86 +0.4
364,868 - +0.4
364,878 + -0.5
365,167 + +0.9
365,610 + 10217 mRNA_1849 0.16 +0.2
365,819 - 10217 mRNA_1849 0.26 +1.1
365,855 + 10217 mRNA_1849 0.27 +0.1
366,005 - 10217 mRNA_1849 0.34 -0.5
366,183 + 10217 mRNA_1849 0.42 +0.9
366,441 + 10217 mRNA_1849 0.53 -0.2
366,601 - 10217 mRNA_1849 0.60 +0.9
366,740 - 10217 mRNA_1849 0.67 -0.2
366,868 - 10217 mRNA_1849 0.72 +0.4
366,871 - 10217 mRNA_1849 0.72 -1.0
366,885 + 10217 mRNA_1849 0.73 +0.2
366,886 - 10217 mRNA_1849 0.73 -0.6
366,895 + 10217 mRNA_1849 0.74 +0.0
366,999 + 10217 mRNA_1849 0.78 +1.1
367,178 - 10217 mRNA_1849 0.86 -0.8
367,184 - 10217 mRNA_1849 0.86 -0.1
367,186 - 10217 mRNA_1849 0.86 -0.0
367,193 + 10217 mRNA_1849 0.87 +0.6
367,199 + 10217 mRNA_1849 0.87 +1.4
367,203 + 10217 mRNA_1849 0.87 -0.4
367,206 - 10217 mRNA_1849 0.87 -1.2
367,312 - +0.5
367,350 - +0.6
367,354 + -0.0
367,366 - +0.5
367,380 + -0.1
367,498 + -0.2
367,518 - +0.9
367,519 + -0.3
367,649 + +0.0
367,654 - +0.3
367,655 + -0.4
367,671 + +0.5
367,693 + +0.6
367,713 + +1.8
367,717 - +0.1
367,726 + -0.7
367,728 + +1.4
367,747 - +0.3
367,748 - +0.4
367,755 + +0.3
367,757 + +0.3
367,773 - -0.7
367,774 - -0.1
367,779 - +0.1
367,784 + -0.5
367,789 + -0.5
367,895 + -0.6
367,898 - -0.2
367,909 + -0.3
367,909 - +0.8
367,912 - +0.7
367,916 - +3.0
367,921 - +0.1
367,936 + -0.5
367,939 + -0.7
367,940 + +1.3
367,940 - +2.0
367,960 + -0.8
367,962 + -0.4
367,968 - +0.1
367,985 - -0.4
367,994 + +0.3
367,998 + -0.2
368,031 - +0.4
368,051 + -0.1
368,055 - +2.2
368,064 - -0.7
368,067 + -0.0
368,085 - +0.6
368,109 + +0.0
368,120 - +0.8
368,146 + +1.1
368,407 - -2.1

Or see this region's nucleotide sequence