Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1856

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10223 and 10224 are separated by 184 nucleotides10224 and 10225 are separated by 288 nucleotides mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380,959 to 382,150 10223 mRNA_1856: 10224 - K10863 APTX aprataxin, at 382,335 to 383,661 10224 mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383,950 to 386,547 10225

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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381,408 + 10223 mRNA_1855 0.38 -0.8
381,436 - 10223 mRNA_1855 0.40 -1.5
381,703 + 10223 mRNA_1855 0.62 -0.1
381,707 + 10223 mRNA_1855 0.63 -0.9
381,710 - 10223 mRNA_1855 0.63 -0.6
381,883 + 10223 mRNA_1855 0.78 +0.5
381,909 + 10223 mRNA_1855 0.80 +1.4
382,332 + +0.6
382,440 - +0.3
382,465 - +1.2
382,478 + 10224 mRNA_1856 0.11 -0.2
382,605 + 10224 mRNA_1856 0.20 +0.6
383,428 - 10224 mRNA_1856 0.82 -1.3
383,454 - 10224 mRNA_1856 0.84 -1.5
383,459 - 10224 mRNA_1856 0.85 -2.3
383,753 - +1.7
383,946 - +0.2
384,191 + +0.7
384,504 - 10225 mRNA_1857 0.21 +0.1
384,513 + 10225 mRNA_1857 0.22 +0.9

Or see this region's nucleotide sequence