Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1860

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10227 and 10228 are separated by 271 nucleotides10228 and 10229 are separated by 141 nucleotides mRNA_1859: 10227 - SUPERFAMILY--SSF57997, at 388,857 to 391,098 10227 mRNA_1860: 10228 - K02259 COX15 cytochrome c oxidase assembly protein subunit 15, at 391,370 to 393,300 10228 mRNA_1861: 10229 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 393,442 to 393,978 10229

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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390,759 + 10227 mRNA_1859 0.85 +1.8
390,796 + 10227 mRNA_1859 0.86 +0.6
393,359 + +0.5
393,396 + +0.8
394,285 + +0.1
394,285 + +2.2
394,300 - -0.8

Or see this region's nucleotide sequence