Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1898

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10265 and 10266 are separated by 594 nucleotides10266 and 10267 are separated by 527 nucleotides mRNA_1897: 10265 - K07443 ybaZ methylated-DNA-protein-cysteine methyltransferase related protein, at 458,444 to 459,156 10265 mRNA_1898: 10266 - K09422 MYBP myb proto-oncogene protein, plant, at 459,751 to 462,341 10266 mRNA_1899: 10267 - K14946 RBFOX, FOX RNA binding protein fox-1, at 462,869 to 464,416 10267

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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458,851 + 10265 mRNA_1897 0.57 +0.4
458,873 - 10265 mRNA_1897 0.60 +0.2
458,879 - 10265 mRNA_1897 0.61 +0.5
458,887 + 10265 mRNA_1897 0.62 -0.2
458,887 - 10265 mRNA_1897 0.62 -1.5
458,900 - 10265 mRNA_1897 0.64 -0.6
458,912 - 10265 mRNA_1897 0.66 +0.9
458,918 - 10265 mRNA_1897 0.66 -0.7
458,923 - 10265 mRNA_1897 0.67 -0.7
458,946 + 10265 mRNA_1897 0.70 -1.8
458,950 - 10265 mRNA_1897 0.71 +1.3
458,975 - 10265 mRNA_1897 0.74 -0.1
459,090 - -0.1
459,100 - +0.8
459,110 + +0.1
459,204 - +0.5
459,211 + +2.5
459,212 + +1.2
459,218 - -0.3
459,222 + +0.5
459,226 - -0.0
459,233 - +0.9
459,236 - -0.0
459,238 - -0.3
459,254 - +1.1
459,260 + -0.8
459,265 + +0.1
459,275 - -0.5
459,276 - +0.4
459,278 + +2.0
459,298 - +0.7
459,300 - +0.4
459,302 - +0.0
459,319 + -0.3
459,325 + -1.5
459,326 + +0.3
459,330 - -0.4
459,330 + +1.3
459,332 + -0.4
459,345 + -2.8
459,356 - +0.1
459,365 + -0.0
459,365 - +2.5
459,365 - +0.0
459,383 + +0.7
459,391 - -0.3
459,394 + +1.0
459,399 + -0.2
459,399 - -0.6
459,401 - +0.3
459,402 - -0.5
459,420 + +0.6
459,506 - +0.4
459,511 - +0.3
459,526 - +0.2
459,526 - -1.1
459,533 + -0.8
459,541 + -0.3
459,545 - +1.0
459,674 + +0.6
459,711 + -1.3
459,821 - -2.0
460,423 + 10266 mRNA_1898 0.26 -0.2
462,424 + +0.8
462,426 - +0.0
462,557 - +1.3
462,562 - -0.6
462,565 - +2.0
462,572 + +2.1
462,574 + +0.3
462,696 - -0.0
462,708 + +0.8
462,723 - -1.7
462,857 - -0.8
462,865 + +0.4
463,019 + +1.1
463,166 - 10267 mRNA_1899 0.19 -0.2
463,194 - 10267 mRNA_1899 0.21 +1.0

Or see this region's nucleotide sequence