Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1903

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10271 and 10272 are separated by 745 nucleotides mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474,303 to 478,311 10271 mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594 10272

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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473,336 + +0.0
473,601 - -1.2
473,902 + -1.1
473,909 - +0.4
473,911 + -1.3
473,924 + +0.2
473,933 + -0.0
474,049 - +1.0
474,057 - -0.8
474,069 + -0.8
474,180 - -0.6
474,196 - -1.3
474,201 + +1.1
474,221 - -0.6
474,229 - +1.1
474,253 + +0.2
474,259 + +1.6
478,198 - +1.5
478,730 - +1.3
479,113 + +0.6
479,278 + 10272 mRNA_1904 0.14 -0.3
479,284 - 10272 mRNA_1904 0.15 -2.8

Or see this region's nucleotide sequence