Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1911

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10278 and 10279 are separated by 167 nucleotides10279 and 10280 are separated by 331 nucleotides mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495,564 to 497,825 10278 mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497,993 to 499,871 10279 mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500,203 to 502,614 10280

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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497,026 - 10278 mRNA_1910 0.65 +0.3
497,045 - 10278 mRNA_1910 0.65 -0.3
497,612 + -0.6
497,615 + +0.2
497,903 - -0.2
497,906 + +1.7
497,915 - -1.1
497,916 + +1.5
497,932 + -1.4
497,934 + +0.2
498,067 + +2.0
498,072 - +1.7
498,512 + 10279 mRNA_1911 0.28 +1.0
499,112 + 10279 mRNA_1911 0.60 +2.1
499,125 + 10279 mRNA_1911 0.60 +2.4
499,291 + 10279 mRNA_1911 0.69 +0.6
499,407 - 10279 mRNA_1911 0.75 +2.7
499,546 - 10279 mRNA_1911 0.83 +1.0
499,684 - +1.1
499,692 - -1.1
499,857 + -1.0
499,859 + -0.6
500,024 + -0.3
500,154 - +1.0
500,305 - +1.3
500,439 + +2.1

Or see this region's nucleotide sequence