Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1919

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10286 and 10287 are separated by 472 nucleotides10287 and 10288 are separated by 305 nucleotides mRNA_1918: 10286 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 512,631 to 512,981 10286 mRNA_1919: 10287 - K11340 ACTL6A, INO80K actin-like protein 6A, at 513,454 to 515,296 10287 mRNA_1920: 10288 - Hypothetical Protein, at 515,602 to 517,203 10288

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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512,610 - +0.0
512,627 + +1.4
512,782 - 10286 mRNA_1918 0.43 +0.2
513,049 - -0.7
513,063 + -0.1
513,201 - -0.6
513,364 + -0.8
515,533 + +0.1
515,539 - +0.2
515,810 - 10288 mRNA_1920 0.13 +0.1
515,954 + 10288 mRNA_1920 0.22 -0.3
516,274 - 10288 mRNA_1920 0.42 +0.1

Or see this region's nucleotide sequence