Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1950

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10318 and 10319 are separated by 506 nucleotides mRNA_1950: 10318 - K03965 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9, at 586,825 to 587,644 10318 mRNA_1951: 10319 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 588,151 to 591,426 10319

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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585,947 + -0.5
586,188 - -0.8
586,606 - -0.3
586,625 - +1.0
586,633 + -1.7
586,777 - +1.1
586,790 - +2.2
586,863 - +0.1
587,720 + -0.3
587,720 + -1.3
587,775 - +0.0
587,790 - +0.7
587,943 + -2.1
587,948 + -0.6
587,951 - +0.4
587,960 - +0.0
587,983 - -1.0
587,994 - +0.0
588,067 - +0.9
588,115 + -1.0
588,283 - +2.7

Or see this region's nucleotide sequence