Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1972

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10339 and 10340 are separated by 539 nucleotides10340 and 10341 are separated by 370 nucleotides mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642,692 to 644,646 10339 mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645,186 to 645,812 10340 mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646,183 to 650,027 10341

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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644,298 - 10339 mRNA_1971 0.82 +0.7
644,317 + 10339 mRNA_1971 0.83 -1.6
645,956 + +2.5

Or see this region's nucleotide sequence