Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1973

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10340 and 10341 are separated by 370 nucleotides10341 and 10342 are separated by 226 nucleotides mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645,186 to 645,812 10340 mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646,183 to 650,027 10341 mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650,254 to 651,223 10342

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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645,956 + +2.5
647,793 - 10341 mRNA_1973 0.42 +1.5
648,124 - 10341 mRNA_1973 0.50 +0.7
649,354 - 10341 mRNA_1973 0.82 -1.3
649,362 + 10341 mRNA_1973 0.83 -0.5
649,386 - 10341 mRNA_1973 0.83 +0.1
649,555 - 10341 mRNA_1973 0.88 -0.2
649,776 - -0.3
650,090 - +0.1
650,093 - +0.0
650,122 - +0.9
650,167 + -0.3
650,171 - +0.6
650,194 + -0.8
650,227 + -0.8
650,312 - +0.5
650,402 + 10342 mRNA_1974 0.15 -0.3
650,560 - 10342 mRNA_1974 0.32 -1.0
650,995 - 10342 mRNA_1974 0.76 +3.2

Or see this region's nucleotide sequence